Post tagged: script

by Paul Agapow
in science

tagged imported, sequence-analysis, script, ruby, bioruby, bioinformatics

Attention: This article has been imported from a previous website and has not yet been checked. It may be malformed or incomplete.

Reducing a sequence to SNPs

A script for a simple task.

A largely self-explanatory script. This will "shrink" an alignment, deleting all sites that don't contain a polymorphism in some member sequence. A little bit of script candy as well, this takes any number of files and saves the results in a new file named according to a definable schema:

#!/usr …
by Paul Agapow
in software

tagged software, python, presentation, script

rst2beamer

A restructured text-based tool for preparing presentations.

Note

rst2beamer has been wildly successful and used far beyond what I imagined. Further development has been taken on by Ryan Krauss and subsequently others. The source has been moved to its own repo on github and that (and the PyPi page) should be used as the primary sources. No …