Ruby, JRuby, Rails, the whole disaster
Source code for ruby benchmarks and support file.
Ruby performance results.
Some quick tests of Ruby's speed and concurrency.
Explaining the ill-explained ways to obtain a consensus sequence in BioRuby.
A BioRuby to check sequences for ambiguous characters and clean them up.
A simple script to check and purge sequence files of possible problems.
A simple script to find and save SNPs within an alignment.
A simple script to count and save SNP data from an alignment.
A very simple script to do a simple but tedious task.
In which we consider the difference difference between “or” and “||” in Ruby
A simple script to grab bioseqs by accession.
Oh BioRuby, you are just as capricious and inconsistent as Ruby itself.
A common task that is surprisingly obscure.
File for the color-dendro.rb script. which colors Dendroscope files.
How to programatically label phylogenies.
For when you have to do lots to a big tree.
Safe and straightforward markup, for renaming files.
A simple universal data sanitizing framework
A better basic debugging tool.
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