Post tagged: galaxy

Common tasks in Galaxy

It's all there in the documentation, but sometimes it's hard to find. This document gives you another place to look.

So how do I ...

... create admin users?

Curiously, the identity of admin users is hardcoded into the Galaxy configuration file. (Which makes it secure, I guess, but separate from the …

Galaxy toolsheds

Galaxy toolsheds

Relatively painless tool-sharing

This is a more recent innovation in Galaxy, which can make it a somewhat confused one: the concept of the toolshed has changed over its lifetime, the documentation is incomplete, and there's a slightly strange emphasis in the documentation that exists. So …

Mile-high description

Toolsheds …

Galaxy miscellanea

Odds and ends and the surprising.


If you are serving the installation with a proxy redirect (e.g. the galaxy server is running on port 7070 but is being redirect by Apache to appear at port 80 on /galaxy), while you can access Galaxy at both addresses, login will …

Installing Galaxy

Setting up a production version of GMOD Galaxy for general use.

This presents one way to create an optimized production Galaxy instance. Variations are certainly possible and some of the choices presented are/were dictated by local culture. Certain settings may be more suitable for production or development environments. Nonetheless, this presents a start-to-stop process for installation and setup.

Note: this …